Physician

Internal Medicine

Catherine E. Farahani, MD works in the field of Internal Medicine. She attended David Geffen School of Medicine at UCLA. David Geffen School of Medicine at UCLA is one of the top medical schools in the US. David Geffen School of Medicine at UCLA is ranked 13/7 in Research/PrimaryCare. She over the years received 1 awards: "Meaningful Use Stage 1 Certification". Catherine Farahani is also a published physician. She has 90 publication published. The most recent publication is: Accuracy of Genomic Prediction in Switchgrass (Panicum virgatum L.) Improved by Accounting for Linkage Disequilibrium.

Publications

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• Accuracy of Genomic Prediction in Switchgrass (Panicum virgatum L.) Improved by Accounting for Linkage Disequilibrium.
• A Revolution in Plant Metabolism: Genome-Enabled Pathway Discovery.
• A foundation for provitamin a biofortification of maize: genome-wide association and genomic prediction models of carotenoid levels.
• Treatment of potato tubers with the synthetic cytokinin 1-(α-ethylbenzyl)-3-nitroguanidine results in rapid termination of endodormancy and induction of transcripts as...
• QTL mapping and phenotypic variation for root architectural traits in maize (Zea mays L.).
• A Root-Expressed l-Phenylalanine:4-Hydroxyphenylpyruvate Aminotransferase Is Required for Tropane Alkaloid Biosynthesis in Atropa belladonna.
• Insights into the Effects of Long-Term Artificial Selection on Seed Size in Maize.
• Nucleotide polymorphism and copy number variant detection using exome capture and next generation sequencing in the polyploid grass Panicum virgatum.
• Phenotypic and transcriptional analysis of divergently selected maize populations reveals the role of developmental timing in seed size determination.
• Boom-Bust Turnovers of Megabase-Sized Centromeric DNA in Solanum Species: Rapid Evolution of DNA Sequences Associated with Centromeres.
• Insights into the maize pan-genome and pan-transcriptome.
• A Genome-Wide Scan for Evidence of Selection in a Maize Population Under Long-Term Artificial Selection for Ear Number.
• CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of β-Carotene Content in Arabidopsis Seeds.
• Retrospective View of North American Potato (Solanum tuberosum L.) Breeding in the 20th and 21st Centuries.
• Copy number variation in potato - an asexually propagated autotetraploid species.
• Tapping the Promise of Genomics in Species with Complex, Nonmodel Genomes.
• Marker Density and Read-Depth for Genotyping Populations Using Genotyping-by-Sequencing.
• Bioinformatics challenges in de novo transcriptome assembly using short read sequences in the absence of a reference genome sequence.
• Functional Identification of Valerena-1,10-diene Synthase, a Terpene Synthase Catalyzing a Unique Chemical Cascade in the Biosynthesis of Biologically Active Sesquiter...
• Development of transcriptomic resources for interrogating the biosynthesis of monoterpene indole alkaloids in medicinal plant species.
• Whole Transcriptome Profiling of Maize during Early Somatic Embryogenesis Reveals Altered Expression of Stress Factors and Embryogenesis-Related Genes.
• Comparative genomics reveals insight into virulence strategies of plant pathogenic oomycetes.
• Carbohydrate-active enzymes in pythium and their role in plant cell wall and storage polysaccharide degradation.
• Genome-wide association study and pathway-level analysis of tocochromanol levels in maize grain.
• Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays.
• The Biofuel Feedstock Genomics Resource: a web-based portal and database to enable functional genomics of plant biofuel feedstock species.
• The Comprehensive Phytopathogen Genomics Resource: a web-based resource for data-mining plant pathogen genomes.
• The transcriptome of the reference potato genome Solanum tuberosum Group Phureja clone DM1-3 516R44.
• Gene coexpression network analysis as a source of functional annotation for rice genes.
• Genome sequence and analysis of the tuber crop potato.
• Single nucleotide polymorphism discovery in elite North American potato germplasm.
• Comparative FISH mapping of Daucus species (Apiaceae family).
• A stereoselective hydroxylation step of alkaloid biosynthesis by a unique cytochrome P450 in Catharanthus roseus.
• Genome-wide atlas of transcription during maize development.
• Twenty-first century plant biology: impacts of the Arabidopsis genome on plant biology and agriculture.
• Suppression of the vacuolar invertase gene prevents cold-induced sweetening in potato.
• Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire.
• Lineage-specific regions in Pseudomonas syringae pv tomato DC3000.
• Evolution of chromosome 6 of Solanum species revealed by comparative fluorescence in situ hybridization mapping.
• Comparative analyses reveal distinct sets of lineage-specific genes within Arabidopsis thaliana.
• Evolutionary and expression signatures of pseudogenes in Arabidopsis and rice.
• Identification and characterization of pseudogenes in the rice gene complement.
• Genomewide SNP variation reveals relationships among landraces and modern varieties of rice.
• Plant genome annotation methods.
• A recommendation for naming transcription factor proteins in the grasses.
• Splendor in the grasses.
• Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: new functional implications for MITEs.
• Analysis of the Pythium ultimum transcriptome using Sanger and Pyrosequencing approaches.
• Poaceae genomes: going from unattainable to becoming a model clade for comparative plant genomics.
• Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy.
• Chromatin structure and physical mapping of chromosome 6 of potato and comparative analyses with tomato.
• Analysis of 90 Mb of the potato genome reveals conservation of gene structures and order with tomato but divergence in repetitive sequence composition.
• Plant database resources at The Institute for Genomic Research.
• Characterization of paralogous protein families in rice.
• Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments.
• Diversity in conserved genes in tomato.
• EuCAP, a Eukaryotic Community Annotation Package, and its application to the rice genome.
• Identification and characterization of lineage-specific genes within the Poaceae.
• Phenotypic and transcriptomic changes associated with potato autopolyploidization.
• Improvement of whole-genome annotation of cereals through comparative analyses.
• Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis.
• The TIGR Rice Genome Annotation Resource: improvements and new features.
• The TIGR Plant Transcript Assemblies database.
• Bioinformatics-enabled identification of the HrpL regulon and type III secretion system effector proteins of Pseudomonas syringae pv. phaseolicola 1448A.
• Expressed sequence tags from loblolly pine embryos reveal similarities with angiosperm embryogenesis.
• Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere.
• Intron gain and loss in segmentally duplicated genes in rice.
• Sequencing multiple and diverse rice varieties. Connecting whole-genome variation with phenotypes.
• Mitochondrial genome sequences and molecular evolution of the Irish potato famine pathogen, Phytophthora infestans.
• Microarray expression profiling resources for plant genomics.
• Transcription and histone modifications in the recombination-free region spanning a rice centromere.
• Comparative analyses of six solanaceous transcriptomes reveal a high degree of sequence conservation and species-specific transcripts.
• Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition.
• Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species.
• Analyzing the potato abiotic stress transcriptome using expressed sequence tags.
• The institute for genomic research Osa1 rice genome annotation database.
• Gene expression profiling of potato responses to cold, heat, and salt stress.
• Structure, divergence, and distribution of the CRR centromeric retrotransposon family in rice.
• A workshop report on wheat genome sequencing: International Genome Research on Wheat Consortium.
• Arabidopsis to rice. Applying knowledge from a weed to enhance our understanding of a crop species.
• Sequencing of a rice centromere uncovers active genes.
• The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants.
• The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000.
• High-throughput fingerprinting of bacterial artificial chromosomes using the snapshot labeling kit and sizing of restriction fragments by capillary electrophoresis.
• Gene RB cloned from Solanum bulbocastanum confers broad spectrum resistance to potato late blight.
• A workshop on establishing a rice resource center in the United States.
• Molecular and cytological analyses of large tracks of centromeric DNA reveal the structure and evolutionary dynamics of maize centromeres.
• Comparative analyses of potato expressed sequence tag libraries.
• The TIGR rice genome annotation resource: annotating the rice genome and creating resources for plant biologists.

Doctors Specialties

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• Internal Medicine

Accepted Insurances

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Awards

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• Meaningful Use Stage 1 Certification

Education

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• David Geffen School of Medicine at UCLA

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